Problem with mysqlclient library
(1) By Dru on 2020-02-18 14:56:52 [link]
Hey Folks, could you please help me a bit? I'm trying to install MySQL++ on CentOS 7.7. This is what I get when running ./configure: [root@localhost mysql++-3.2.5]# ./configure checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for gcc... /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc accepts -g... yes checking for /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc option to accept ISO C89... none needed checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc... /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-ld checking if the linker (/root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-nm checking the name lister (/root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-ld option to reload object files... -r checking for objdump... /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-strip checking for ranlib... /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-ranlib checking for gawk... gawk checking command to parse /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-nm output from /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cpp checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc supports -fno-rtti -fno-exceptions... no checking for /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc option to produce PIC... -fPIC -DPIC checking if /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc PIC flag -fPIC -DPIC works... yes checking if /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc static flag -static works... yes checking if /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc supports -c -o file.o... yes checking if /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc supports -c -o file.o... (cached) yes checking whether the /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc linker (/root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc checking whether we are using the GNU C compiler... (cached) yes checking whether /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc accepts -g... (cached) yes checking for /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc option to accept ISO C89... (cached) none needed checking for ANSI C header files... (cached) yes checking for getopt... yes checking whether -lm is needed to use C math functions... no checking whether -lsocket is needed... no checking whether -lnsl is needed... no checking for MySQL include directory... /usr/include/mysql checking for MySQL C API library directory... no joy configure: error: Didn't find mysqlclient library in '/usr/lib64 /usr/lib /usr/lib64/mysql /usr/lib/mysql /usr/local/lib64 /usr/local/lib /usr/local/lib/mysql /usr/local/mysql/lib /usr/local/mysql/lib/mysql /usr/mysql/lib/mysql /opt/mysql/lib /opt/mysql/lib/mysql /sw/lib /sw/lib/mysql' I have also tried this: ./configure --with-mysql-lib=/usr/lib64/mysql/ resulting in this: checking for MySQL C API library directory... no joy configure: error: Didn't find mysqlclient library in '/usr/lib64/mysql/ /usr/lib64/mysql//lib64 /usr/lib64/mysql//lib /usr/lib64/mysql//lib64/mysql /usr/lib64/mysql//lib/mysql' #the content of /usr/lib64/mysql/ is #libmysqlclient_r.so libmysqlclient.so libmysqlclient.so.18 libmysqlclient.so.18.0.0 mysql_config plugin N.B. I have installed mysql-devel using yum. Could you please give any hints how I could solve this? Thank you very much! And have a nice day!
(2) By Warren Young (tangent) on 2020-02-18 15:11:58 in reply to 1 [link]
> checking whether we are using the GNU C compiler... yes > checking whether /root/anaconda2/bin/x86_64-conda_cos6-linux-gnu-cc accepts -g... yes Does the problem clear up if you use the platform compiler? > the content of `/usr/lib64/mysql/` is ... `libmysqlclient_r.so` ... Simply finding the library file isn't enough, it also has to link against the definitions provided in the header file. Search the `config.log` file for similar errors, which should be near the end of that file. They'll probably guide you to the problem without any more help from me, but if not, trim what seems relevant and I'll see what I can see. Do not post the entire file...it'll be huge.
(3) By Dru on 2020-02-18 15:23:37 in reply to 2 [link]
Thanks for this. I'm surely not an IT guy, just a biologist :) One last question - how to use the platform compiler? Thank you, All the best,
(4) By Warren Young (wyetr) on 2020-02-18 15:46:21 in reply to 3
I'm talking about the OS-supplied version of the development tools, as opposed to this "anaconda2" stuff, whatever that is. This may get you started: $ sudo yum group install "Development Tools"
(5) By Dru on 2020-02-19 06:46:01 in reply to 4 [link]
hey wyetr, thank you for this. I got rid of anaconda and used another compiler. Everything works without any problem. All the best,